Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015921604.1_cds_XP_016470503.1_62946
CDS Infomation

[gene=LOC107792781] [db_xref=GeneID:107792781] [protein=putative E3 ubiquitin-protein ligase RING1a] [protein_id=XP_016470503.1] [location=complement(join(6434..6499,6803..7012,7114..7221,7679..8179,8575..8616,8708..8828,8910..8991,10062..10120,15412..15454,15612..15732))] [gbkey=CDS]
Sequence

ATGCCTGCTCAAAAGCGTTCGTACGACACTCCTCCTACTCCTCCTCCGCTACCGGACGAA
AAAAACGATGATTCGTTACAAGGTAATCAAAATCACGACGAAGAAGCCTACGACAGCGAC
GATTCGGATGGAACTACTTGTTCGAGCGGCGGCGAGAAAGATGAATTTATCACTGTGAGA
CTTTCAGAAATTCGCAAAGAAGTACAGTGCCCTATATGTTTAGGCATTATTCGAAAGACC
AGAACAGTTATGGAATGCTTGCATCGCTTTTGTAGAGAATGCATTGACAAATCTATGCGA
ATGGGGAACAATGAGTGTCCTGCTTGTCGTACCCACTGTGCTAGTCGCCGTTCTCTGAGA
GATGATCCAAACTATGATGCTCTAATTTCCCTTCTATATCCAGATATTGATAAATATGAA
GAGGAGGAATTGGCTTTTCATGAAGAGGAGAAAGCTCGGAATAAGCAGATACAAGCTTCA
ATTGCACAGACATTACGGCGACAATCAGAAGCACTGGGAAGGAAACGGACTGCTAGAGCT
ACAGCAGCAGCTTTTGCGAGGAGATCTCAGGGACGCTATCGAAGTTTAAGGGGAAGAAGA
AATTTTCAGGGTGCTGAACACCAGATATCTGATGAGGAGGAAGATGGTAATCATGATATT
GGCAAAGATTCTTCCTCTGCTGATGATCGCTCGATAGAAGTCAAACCAAAACGGTACAAA
AAGAGGGGAGGAAGGCCTTCGCAGGCTTCAGCAGCTAGTGACGAAAATGATGCAGAAATA
AACCAAGAATCACTTGGCGCATGTAGTGGACTTATTCGCTGTTCAGAGATTCTTGCCTGG
GGAAAAGGTGGCATGCGAAGTAACACGAGACATGGGGGTCTTGGGGGAGGCACTGGCAAA
TTTTCCAGGAATAGCCGAGTCTCAAAGCTAATTGATCGTCTTTCTTGTTCAGATGAAAAT
GAAGGGAAGTTGGATGTCAGACTGAAGCTTGTTCCCATATCTGAAGAGGATATACCAAGT
TTGCAACGACCTTACCTTTGCTGCCGGCCCACTATGGAAGTTAAACATTTGAGCCAATAT
GTAGCACAGCAAACGTCCATAGAAGTCGGCAAAATCGACATAGTGCTGATAAAAGAGCTT
AACCCCAGTGACAACTCTTCAAGTTCTGATATCATGGCTATTTCCACACTCGTTGGAGAT
CCTTGTAAGATTGAAATCCATACGGTAAACGAGCATCAGACATTAGGGGAAATCCAAGAG
ATGTGTGGTTTTAGCCAGCGTAATCTGATCTTAGCATACGGATGCAAGTCAAAGGATAGG
ACAGACCATGATGAAGGGAAGGTGACCGTGTAA

Peptide Sequence

PEP ID

XP_016470503.1
PEP Infomation

PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Nicotiana tabacum]
Sequence

MPAQKRSYDTPPTPPPLPDEKNDDSLQGNQNHDEEAYDSDDSDGTTCSSGGEKDEFITVR
LSEIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRMGNNECPACRTHCASRRSLR
DDPNYDALISLLYPDIDKYEEEELAFHEEEKARNKQIQASIAQTLRRQSEALGRKRTARA
TAAAFARRSQGRYRSLRGRRNFQGAEHQISDEEEDGNHDIGKDSSSADDRSIEVKPKRYK
KRGGRPSQASAASDENDAEINQESLGACSGLIRCSEILAWGKGGMRSNTRHGGLGGGTGK
FSRNSRVSKLIDRLSCSDENEGKLDVRLKLVPISEEDIPSLQRPYLCCRPTMEVKHLSQY
VAQQTSIEVGKIDIVLIKELNPSDNSSSSDIMAISTLVGDPCKIEIHTVNEHQTLGEIQE
MCGFSQRNLILAYGCKSKDRTDHDEGKVTV

Transcript Sequence

Gene sequence data has not been registered.